PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.2KG048300.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 521aa    MW: 55321.3 Da    PI: 9.4453
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.2KG048300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH56.84e-18330376455
                          HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                           hn+ ErrRRdriN+++  L+el+P++      K +Ka+iL +A+eY+ksLq
  Pavir.2KG048300.1.p 330 VHNMSERRRRDRINEKMRALQELVPHC-----NKTDKASILDEAIEYLKSLQ 376
                          6*************************8.....6******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.07E-18321380No hitNo description
SuperFamilySSF474591.44E-21324391IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.743326375IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.3E-22330385IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.6E-15330376IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.4E-18332381IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 521 aa     Download sequence    Send to blast
MSTPPPLHTN AGGRLSLSLS QTDAAPHGLF LRSLNLGGRT ERERARIQPL VGRSIAGGIL  60
VLSRSYAQVA ELFYKKSSAV GGTSARPGPR SGYSPWTAAR GRRRPRRDPS RNQSFLLPLL  120
HCFLAARLVF LIRSSFAPFH SARRSPDGEL VELLWQDGAV VAHSQAAQRA VAGAGNTGAS  180
GVTGEAAAWL PGGGALGGDV YSQLWQSIAQ ADGRVGARPP ARSGNSAAGS SRTAGEVGSS  240
FCGSNLVAAA RHLDDDIDDV AALPPPPPPG DEPGACGGAS TSSGWNSNAL LKRSRDELDF  300
RSEDADLDTV DETPASRRPA SKRRTRAAEV HNMSERRRRD RINEKMRALQ ELVPHCNKTD  360
KASILDEAIE YLKSLQMQVQ IMWMSTGMAP MMLPGAHQLM PPMSMGLNSA YMPPAAQFLS  420
QIQTVPPFLS NPLPNQIPQI SPASTSAPNV TNQVQSNRMA QPRNPFLHPN DALTSTPQLP  480
SLFGYGPQMA QENAIQELLA CTAAPALDAE QLSSSDGTGT *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1321338KRRTRAAEVHNMSERRRR
2334339ERRRRD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004955437.10.0PREDICTED: transcription factor PIF4-like
TrEMBLK3ZTU80.0K3ZTU8_SETIT; Uncharacterized protein
STRINGSi030028m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP31743482
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09530.22e-32phytochrome interacting factor 3